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I have this HBA in my homelab server and was surprised to find it has two SAS controller in it. I can't remember exactly what I had to do to flash it, but I needed to flash both controllers using an EFI prompt so they became one controller. It took an afternoon of research, but I eventually flashed both of them to IT mode and it worked as expected. I'm pretty sure this thread helped me at the time:
https://forums.servethehome.com/index.php?threads/original-lsi-sas-9300-16i-problem-flashing-please-help.36618/
Good luck!
Drives are hot-swappable with this HBA, right?
The HBA can definitely handle hot swapping, but I'm pretty sure you need a backplane for it to work. If I remember correctly, it needs the capacitors on the backplane's PCB to allow for the power drain. I'm not sure those cables alone will do.
Ah. Will trying to hit swap damage the drives? Or just won’t work?
I honestly don't know what would happen, but I wouldn't try it. Hard disks are sensitive things.